Splicing Lore

Acknowledgements

  • GEO , an international public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomics data submitted by the research community.
  • The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build a comprehensive list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.
  • We gratefully acknowledge support from the PSMN (Pôle Scientifique de Modélisation Numérique) of the ENS de Lyon for the computing resources.



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    ProjectsCell lineGEO Omnibus / ENCODE
    AKAP8L_ENCSR807ODB_HepG2HepG2 ENCSR807ODB
    AKAP8L_ENCSR809ISU_K562K562 ENCSR809ISU
    AQR_ENCSR624OUI_K562K562 ENCSR624OUI
    CCAR1_ENCSR081IAO_HepG2HepG2 ENCSR081IAO
    CELF1_ENCSR695XOD_HepG2HepG2 ENCSR695XOD
    DAZAP1_ENCSR220TBR_HepG2HepG2 ENCSR220TBR
    DAZAP1_ENCSR840QFR_HepG2HepG2 ENCSR840QFR
    DAZAP1_GSE52745_293T293T GSE52745
    DAZAP1_GSE97262_SH-SY5YSH-SY5Y GSE97262
    DDX5_DDX17_GSE123752_293T293T GSE123752
    DDX5_DDX17_GSE98871_SH-SY5YSH-SY5Y GSE98871
    DDX5_DDX17_LBMC_MCF7MCF7 LBMC
    ESRP2_GSE60559_293T293T GSE60559
    EWSR1_ENCSR532ZPP_HepG2HepG2 ENCSR532ZPP
    FUBP1_ENCSR608IXR_K562K562 ENCSR608IXR
    FUS_LBMC_MCF7MCF7 LBMC
    GPKOW_ENCSR967QNT_K562K562 ENCSR967QNT
    HNRNPA1_ENCSR048BWH_K562K562 ENCSR048BWH
    HNRNPA1_ENCSR182DAW_HepG2HepG2 ENCSR182DAW
    HNRNPA1_GSE34996_293T293T GSE34996
    HNRNPA2B1_ENCSR769GES_HepG2HepG2 ENCSR769GES
    HNRNPA2B1_ENCSR794NUE_K562K562 ENCSR794NUE
    HNRNPA2B1_GSE34996_293T293T GSE34996
    HNRNPC_ENCSR052IYH_HepG2HepG2 ENCSR052IYH
    HNRNPC_ENCSR634KBO_K562K562 ENCSR634KBO
    HNRNPC_GSE56010_293T293T GSE56010
    HNRNPC_GSE63086_MG63MG63 GSE63086
    HNRNPC_LBMC_MCF7MCF7 LBMC
    HNRNPD_ENCSR660MZN_HepG2HepG2 ENCSR660MZN
    HNRNPE1-PCBP1_ENCSR545AIK_K562K562 ENCSR545AIK
    HNRNPE1-PCBP1_ENCSR635FRH_HepG2HepG2 ENCSR635FRH
    HNRNPE2-PCBP2_ENCSR028ITN_HepG2HepG2 ENCSR028ITN
    HNRNPE2-PCBP2_ENCSR648QFY_K562K562 ENCSR648QFY
    HNRNPF_ENCSR693MZJ_HepG2HepG2 ENCSR693MZJ
    HNRNPF_GSE107542_HMLEHMLE GSE107542
    HNRNPF_GSE34996_293T293T GSE34996
    HNRNPG-RBMX_KD1_GSE74085_293T293T GSE74085
    HNRNPG-RBMX_KD2_GSE74085_293T293T GSE74085
    HNRNPH1_GSE104559_RDRD GSE104559
    HNRNPH1_GSE104559_RDRD GSE104559
    HNRNPH1_GSE104559_RH30RH30 GSE104559
    HNRNPH1_GSE104559_RH30RH30 GSE104559
    HNRNPH1_GSE104559_RH41RH41 GSE104559
    HNRNPH1_GSE104559_RH41RH41 GSE104559
    HNRNPH1_GSE34996_293T293T GSE34996
    HNRNPH1_LBMC_MCF7MCF7 LBMC
    HNRNPK_ENCSR529JNJ_K562K562 ENCSR529JNJ
    HNRNPK_ENCSR853ZJS_HepG2HepG2 ENCSR853ZJS
    HNRNPK_GSE52834_GM19238GM19238 GSE52834
    HNRNPK_GSE60890_A673A673 GSE60890
    HNRNPK_LBMC_MCF7MCF7 LBMC
    HNRNPL_ENCSR155BMF_HepG2HepG2 ENCSR155BMF
    HNRNPL_ENCSR563YIS_K562K562 ENCSR563YIS
    HNRNPL_GSE52834_GM19238GM19238 GSE52834
    HNRNPL_GSE72842_LNCaPLNCaP GSE72842
    HNRNPM_ENCSR746NIM_K562K562 ENCSR746NIM
    HNRNPM_ENCSR995JMS_HepG2HepG2 ENCSR995JMS
    HNRNPM_GSE34996_293T293T GSE34996
    HNRNPM_GSE57243_LM2LM2 GSE57243
    HNRNPP-FUS-TLS_A4_GSE71812_SH-SY5YSH-SY5Y GSE71812
    HNRNPP-FUS-TLS_A5_GSE71812_SH-SY5YSH-SY5Y GSE71812
    HNRNPP-FUS-TLS_ENCSR927JXU_HepG2HepG2 ENCSR927JXU
    HNRNPU_ENCSR047IUS_K562K562 ENCSR047IUS
    HNRNPU_ENCSR308IKH_HepG2HepG2 ENCSR308IKH
    HNRNPU_ENCSR732ICL_K562K562 ENCSR732ICL
    HNRNPU_GSE34996_293T293T GSE34996
    HNRNPU_GSE45157_HeLAHela GSE45157
    KHSRP_ENCSR561CBC_K562K562 ENCSR561CBC
    KHSRP_ENCSR850CKU_HepG2HepG2 ENCSR850CKU
    MATR3_ENCSR492UFS_HepG2HepG2 ENCSR492UFS
    MATR3_ENCSR792XFP_K562K562 ENCSR792XFP
    MBNL1-2_GSE45505_HeLAHela GSE45505
    MBNL1_GSE88116_K562K562 GSE88116
    MBNL2_GSE83999_786-O786-O GSE83999
    MBNL2_GSE83999_A498A498 GSE83999
    NCBP2_ENCSR030ARO_HepG2HepG2 ENCSR030ARO
    NCBP2_ENCSR361LBE_K562K562 ENCSR361LBE
    PPIG_ENCSR529MBZ_K562K562 ENCSR529MBZ
    PPIG_ENCSR620HAA_HepG2HepG2 ENCSR620HAA
    PPP1R8_ENCSR844QNT_K562K562 ENCSR844QNT
    PRPF4_ENCSR215FRI_HepG2HepG2 ENCSR215FRI
    PRPF4_ENCSR363QIA_K562K562 ENCSR363QIA
    PRPF8_ENCSR137HKS_K562K562 ENCSR137HKS
    PRPF8_ENCSR998MZP_HepG2HepG2 ENCSR998MZP
    PTBP1-2_GSE69656_293T293T GSE69656
    PTBP1_ENCSR064DXG_HepG2HepG2 ENCSR064DXG
    PTBP1_ENCSR239BCO_K562K562 ENCSR239BCO
    PTBP1_ENCSR527IVX_K562K562 ENCSR527IVX
    PTBP1_GSE42701_HeLAHela GSE42701
    PTBP1_GSE59884_293T293T GSE59884
    PUF60_ENCSR558XNA_K562K562 ENCSR558XNA
    PUF60_ENCSR648BSC_HepG2HepG2 ENCSR648BSC
    QKI_ENCSR330YOU_HepG2HepG2 ENCSR330YOU
    RAVER1_ENCSR576GOW_HepG2HepG2 ENCSR576GOW
    RBFOX2_GSE60392_293T293T GSE60392
    RBM10_GSE44976_293T293T GSE44976
    RBM15_ENCSR385UPQ_K562K562 ENCSR385UPQ
    RBM15_ENCSR599PXD_HepG2HepG2 ENCSR599PXD
    RBM17_ENCSR385TMY_HepG2HepG2 ENCSR385TMY
    RBM17_ENCSR898OPN_K562K562 ENCSR898OPN
    RBM22_ENCSR330KHN_HepG2HepG2 ENCSR330KHN
    RBM22_ENCSR947OIM_K562K562 ENCSR947OIM
    RBM25_ENCSR149DMY_K562K562 ENCSR149DMY
    RBM25_ENCSR610AEI_HepG2HepG2 ENCSR610AEI
    RBM25_GSE89140_293T293T GSE89140
    RBM39_ENCSR678WOA_K562K562 ENCSR678WOA
    RBM39_ENCSR760EGM_HepG2HepG2 ENCSR760EGM
    RBM47_GSE58381_MDA-MB-231MDA-MB-231 GSE58381
    SAFB2_ENCSR110ZYD_HepG2HepG2 ENCSR110ZYD
    SART3_ENCSR954HAY_K562K562 ENCSR954HAY
    SF1_ENCSR562CCA_K562K562 ENCSR562CCA
    SF1_ENCSR644AIM_HepG2HepG2 ENCSR644AIM
    SF3A3_ENCSR374NMJ_HepG2HepG2 ENCSR374NMJ
    SF3A3_ENCSR454KYR_K562K562 ENCSR454KYR
    SF3B1_ENCSR047QHX_K562K562 ENCSR047QHX
    SF3B1_ENCSR896CFV_HepG2HepG2 ENCSR896CFV
    SF3B1_GSE65644_HeLAHela GSE65644
    SF3B4_ENCSR081XRA_K562K562 ENCSR081XRA
    SF3B4_ENCSR148MQK_HepG2HepG2 ENCSR148MQK
    SFPQ_ENCSR535YPK_K562K562 ENCSR535YPK
    SFPQ_ENCSR782MXN_HepG2HepG2 ENCSR782MXN
    SMN1_ENCSR090UMI_HepG2HepG2 ENCSR090UMI
    SMN1_ENCSR129ROE_K562K562 ENCSR129ROE
    SMNDC1_ENCSR408SDL_K562K562 ENCSR408SDL
    SMNDC1_ENCSR995ZGJ_HepG2HepG2 ENCSR995ZGJ
    SNRNP200_ENCSR943LIB_K562K562 ENCSR943LIB
    SNRNP70_ENCSR635BOO_HepG2HepG2 ENCSR635BOO
    SNRPC_GSE42485_HeLAHela GSE42485
    SRSF10_GSE57325_RKORKO GSE57325
    SRSF1_ENCSR066VOO_K562K562 ENCSR066VOO
    SRSF1_ENCSR094KBY_HepG2HepG2 ENCSR094KBY
    SRSF1_GSE26463_HeLAHela GSE26463
    SRSF1_GSE52834_GM19238GM19238 GSE52834
    SRSF2_GSE65349_K562K562 GSE65349
    SRSF2_GSE78705_Huh7Huh7 GSE78705
    SRSF3_ENCSR376FGR_HepG2HepG2 ENCSR376FGR
    SRSF3_GSE52834_GM19238GM19238 GSE52834
    SRSF5_ENCSR781YNI_HepG2HepG2 ENCSR781YNI
    SRSF6_GSE98485_EndoC-BetaH1EndoC-BetaH1 GSE98485
    SRSF7_ENCSR017PRS_HepG2HepG2 ENCSR017PRS
    SRSF7_ENCSR464ADT_K562K562 ENCSR464ADT
    SRSF9_ENCSR113HRG_K562K562 ENCSR113HRG
    SRSF9_ENCSR597XHH_HepG2HepG2 ENCSR597XHH
    STAU1_ENCSR777EDL_K562K562 ENCSR777EDL
    SUGP2_ENCSR192BPV_K562K562 ENCSR192BPV
    SUGP2_ENCSR837QDN_HepG2HepG2 ENCSR837QDN
    TAF15_ENCSR998RZI_HepG2HepG2 ENCSR998RZI
    TARDBP_ENCSR134JRE_K562K562 ENCSR134JRE
    TIA1_ENCSR057GCF_HepG2HepG2 ENCSR057GCF
    TRA2A-B_GSE59335_MDA-MB-231MDA-MB-231 GSE59335
    TRA2A-B_LBMC_MCF7MCF7 LBMC
    U2AF1_E-MTAB-2682_293T293T E-MTAB-2682
    U2AF1_ENCSR342EDG_K562K562 ENCSR342EDG
    U2AF1_ENCSR372UWV_HepG2HepG2 ENCSR372UWV
    U2AF1_GSE58871_K562K562 GSE58871
    U2AF2_ENCSR426UUG_HepG2HepG2 ENCSR426UUG
    U2AF2_ENCSR622MCX_HepG2HepG2 ENCSR622MCX
    U2AF2_ENCSR904CJQ_K562K562 ENCSR904CJQ
    U2AF2_GSE61603_HeLAHela GSE61603

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